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Comparative proteomic analysis of Populus trichocarpa early stem from primary to secondary growth.

Identifieur interne : 001E43 ( Main/Exploration ); précédent : 001E42; suivant : 001E44

Comparative proteomic analysis of Populus trichocarpa early stem from primary to secondary growth.

Auteurs : Jinwen Liu [République populaire de Chine] ; Guanghui Hai [République populaire de Chine] ; Chong Wang [République populaire de Chine] ; Shenquan Cao [République populaire de Chine] ; Wenjing Xu [République populaire de Chine] ; Zhigang Jia [République populaire de Chine] ; Chuanping Yang [République populaire de Chine] ; Jack P. Wang [États-Unis] ; Shaojun Dai [République populaire de Chine] ; Yuxiang Cheng [République populaire de Chine]

Source :

RBID : pubmed:26047713

Descripteurs français

English descriptors

Abstract

Wood is derived from the secondary growth of tree stems. In this study, we investigated the global changes of protein abundance in Populus early stems using a proteomic approach. Morphological and histochemical analyses revealed three typical stages during Populus early stems, which were the primary growth stage, the transition stage from primary to secondary growth and the secondary growth stage. A total of 231 spots were differentially abundant during various growth stages of Populus early stems. During Populus early stem lignifications, 87 differential spots continuously increased, while 49 spots continuously decreased. These two categories encompass 58.9% of all differential spots, which suggests significant molecular changes from primary to secondary growth. Among 231 spots, 165 unique proteins were identified using LC-ESI-Q-TOF-MS, which were classified into 14 biological function groups. The proteomic characteristics indicated that carbohydrate metabolism, oxido-reduction, protein degradation and secondary cell wall metabolism were the dominantly occurring biochemical processes during Populus early stem development. This study helps in elucidating biochemical processes and identifies potential wood formation-related proteins during tree early stem development. It is a comprehensive proteomic investigation on tree early stem development that, for the first time, reveals the overall molecular networks that occur during Populus early stem lignifications.

DOI: 10.1016/j.jprot.2015.05.032
PubMed: 26047713


Affiliations:


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Le document en format XML

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<div type="abstract" xml:lang="en">Wood is derived from the secondary growth of tree stems. In this study, we investigated the global changes of protein abundance in Populus early stems using a proteomic approach. Morphological and histochemical analyses revealed three typical stages during Populus early stems, which were the primary growth stage, the transition stage from primary to secondary growth and the secondary growth stage. A total of 231 spots were differentially abundant during various growth stages of Populus early stems. During Populus early stem lignifications, 87 differential spots continuously increased, while 49 spots continuously decreased. These two categories encompass 58.9% of all differential spots, which suggests significant molecular changes from primary to secondary growth. Among 231 spots, 165 unique proteins were identified using LC-ESI-Q-TOF-MS, which were classified into 14 biological function groups. The proteomic characteristics indicated that carbohydrate metabolism, oxido-reduction, protein degradation and secondary cell wall metabolism were the dominantly occurring biochemical processes during Populus early stem development. This study helps in elucidating biochemical processes and identifies potential wood formation-related proteins during tree early stem development. It is a comprehensive proteomic investigation on tree early stem development that, for the first time, reveals the overall molecular networks that occur during Populus early stem lignifications. </div>
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<AbstractText>Wood is derived from the secondary growth of tree stems. In this study, we investigated the global changes of protein abundance in Populus early stems using a proteomic approach. Morphological and histochemical analyses revealed three typical stages during Populus early stems, which were the primary growth stage, the transition stage from primary to secondary growth and the secondary growth stage. A total of 231 spots were differentially abundant during various growth stages of Populus early stems. During Populus early stem lignifications, 87 differential spots continuously increased, while 49 spots continuously decreased. These two categories encompass 58.9% of all differential spots, which suggests significant molecular changes from primary to secondary growth. Among 231 spots, 165 unique proteins were identified using LC-ESI-Q-TOF-MS, which were classified into 14 biological function groups. The proteomic characteristics indicated that carbohydrate metabolism, oxido-reduction, protein degradation and secondary cell wall metabolism were the dominantly occurring biochemical processes during Populus early stem development. This study helps in elucidating biochemical processes and identifies potential wood formation-related proteins during tree early stem development. It is a comprehensive proteomic investigation on tree early stem development that, for the first time, reveals the overall molecular networks that occur during Populus early stem lignifications. </AbstractText>
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<MeshHeading>
<DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName>
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<Keyword MajorTopicYN="N">Early stem development</Keyword>
<Keyword MajorTopicYN="N">Populus trichocarpa</Keyword>
<Keyword MajorTopicYN="N">Proteomics</Keyword>
<Keyword MajorTopicYN="N">Secondary growth</Keyword>
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<Year>2015</Year>
<Month>05</Month>
<Day>20</Day>
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<PublicationStatus>ppublish</PublicationStatus>
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<ArticleId IdType="pubmed">26047713</ArticleId>
<ArticleId IdType="pii">S1874-3919(15)30024-5</ArticleId>
<ArticleId IdType="doi">10.1016/j.jprot.2015.05.032</ArticleId>
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<affiliations>
<list>
<country>
<li>République populaire de Chine</li>
<li>États-Unis</li>
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<region>
<li>Caroline du Nord</li>
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<name sortKey="Liu, Jinwen" sort="Liu, Jinwen" uniqKey="Liu J" first="Jinwen" last="Liu">Jinwen Liu</name>
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<name sortKey="Cao, Shenquan" sort="Cao, Shenquan" uniqKey="Cao S" first="Shenquan" last="Cao">Shenquan Cao</name>
<name sortKey="Cheng, Yuxiang" sort="Cheng, Yuxiang" uniqKey="Cheng Y" first="Yuxiang" last="Cheng">Yuxiang Cheng</name>
<name sortKey="Dai, Shaojun" sort="Dai, Shaojun" uniqKey="Dai S" first="Shaojun" last="Dai">Shaojun Dai</name>
<name sortKey="Hai, Guanghui" sort="Hai, Guanghui" uniqKey="Hai G" first="Guanghui" last="Hai">Guanghui Hai</name>
<name sortKey="Jia, Zhigang" sort="Jia, Zhigang" uniqKey="Jia Z" first="Zhigang" last="Jia">Zhigang Jia</name>
<name sortKey="Wang, Chong" sort="Wang, Chong" uniqKey="Wang C" first="Chong" last="Wang">Chong Wang</name>
<name sortKey="Xu, Wenjing" sort="Xu, Wenjing" uniqKey="Xu W" first="Wenjing" last="Xu">Wenjing Xu</name>
<name sortKey="Yang, Chuanping" sort="Yang, Chuanping" uniqKey="Yang C" first="Chuanping" last="Yang">Chuanping Yang</name>
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<name sortKey="Wang, Jack P" sort="Wang, Jack P" uniqKey="Wang J" first="Jack P" last="Wang">Jack P. Wang</name>
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